1. name of file containing gene coordinates: ./Arabidopsis_Genome/chr_5_vs_4_coord.txt
2. name of the distance matrix file: ./Arabidopsis_Genome/chr_5_vs_4_matrix.txt
3. number of chromosomes: 3
4. size of chromosomes: 20.0 0 20.0
5. identity upper level: 100
6. identity lower level: 40
7. window size (pixels) X: 2000
8. window size (pixels) Y: 600
9. html prefix: html prefix: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=
10. Title: Arabidopsis segmental duplications, part of chr 5 vs chr 4, 40% identity
11. Laboratory: (Alexander Kozik)
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12. W/C correction: A
13. horizontal size of gene: 7
14. vertical size of gene: 5
15. W/C coefficient: 1
16. W/C correction value: 7
17. chromosome thickness: 5
18. gene feature mode (standard [std] or extended [ext]): std
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19. name of file containing annotation: ./Arabidopsis_Genome/ath_ncbi.annotation