NCBI_blastX.txt Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QGC13K23.yg.ab1 706 nt (706 letters) Database: ./nr 1,172,300 sequences; 371,327,854 total letters Searching.................................................done Score E Sequences producing significant alignments: (bits) Value gi|3914604|sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase... 219 2e-56 gi|6063022|gb|AAF03096.1|AF162195_1 (AF162195) ribulose-1,5-bisp... 216 3e-55 gi|6635351|gb|AAF19793.1|AF162210_1 (AF162210) ribulose-1,5-bisp... 213 2e-54 gi|22652125|gb|AAN03626.1|AF406702_1 (AF406702) BEL1-related hom... 194 1e-48 gi|22652115|gb|AAN03621.1|AF406697_1 (AF406697) BEL1-related hom... 183 2e-45 gi|13877517|gb|AAK43836.1|AF353094_1 (AF353094) BEL1-like homeod... 181 6e-45 gi|15227535|ref|NP_181138.1| (NM_129153) BEL1-like homeobox 1 pr... 181 6e-45 gi|132145|sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase ... 175 4e-43 gi|22652117|gb|AAN03622.1|AF406698_1 (AF406698) BEL1-related hom... 174 1e-42 gi|3914577|sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylas... 169 3e-41 gi|3914581|sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylas... 169 4e-41 gi|3914601|sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase... 167 8e-41 >gi|3914604|sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplast precursor (RuBisCO small subunit) gi|217946|dbj|BAA03103.1| (D14001) riburose-1,5-bisphosphate carboxylase/oxygenase small subunit precursor [Lactuca sativa] Length = 181 Score = 219 bits (558), Expect = 2e-56 Identities = 104/108 (96%), Positives = 106/108 (97%) Frame = -2 Query: 324 SLPTVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK 145 ++ TVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK Sbjct: 8 AIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK 67 Query: 144 KYETPSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS 1 KYET SYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS Sbjct: 68 KYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS 115 >gi|6063022|gb|AAF03096.1|AF162195_1 (AF162195) ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit precursor [Lactuca sativa] Length = 174 Score = 216 bits (549), Expect = 3e-55 Identities = 103/108 (95%), Positives = 105/108 (96%) Frame = -2 Query: 324 SLPTVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK 145 ++ TVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK Sbjct: 8 AIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK 67 Query: 144 KYETPSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS 1 KYET S LPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS Sbjct: 68 KYETLSCLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS 115 >gi|6635351|gb|AAF19793.1|AF162210_1 (AF162210) ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Lactuca sativa] Length = 181 Score = 213 bits (542), Expect = 2e-54 Identities = 100/108 (92%), Positives = 104/108 (95%) Frame = -2 Query: 324 SLPTVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK 145 ++ TVNR+T QASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK Sbjct: 8 AVATVNRSTPAQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK 67 Query: 144 KYETPSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS 1 KYET SYLPPLSDEALSKEIDYLIRNKW+PCLEFELEHGFVYREHHHS Sbjct: 68 KYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHS 115 >gi|22652125|gb|AAN03626.1|AF406702_1 (AF406702) BEL1-related homeotic protein 29 [Solanum tuberosum] Length = 567 Score = 194 bits (492), Expect = 1e-48 Identities = 95/113 (84%), Positives = 97/113 (85%) Frame = +1 Query: 313 GGKAEGGGSRLKFVDNXXXXXXXXXXXGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHP 492 GGK EG SRLKFVDN GMIQHNAWRPQRGLPER+VSVLRAWLFEHFLHP Sbjct: 205 GGKIEG--SRLKFVDNQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHP 262 Query: 493 YPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKEQEQNGL 651 YPKDSDK MLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEE+KE EQNGL Sbjct: 263 YPKDSDKMMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEHEQNGL 315 >gi|22652115|gb|AAN03621.1|AF406697_1 (AF406697) BEL1-related homeotic protein 5 [Solanum tuberosum] Length = 688 Score = 183 bits (464), Expect = 2e-45 Identities = 91/111 (81%), Positives = 94/111 (83%) Frame = +1 Query: 313 GGKAEGGGSRLKFVDNXXXXXXXXXXXGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHP 492 GGK EG SRLKFVD+ GM+Q NAWRPQRGLPER+VSVLRAWLFEHFLHP Sbjct: 361 GGKIEG--SRLKFVDHHLRQQRALQQIGMMQPNAWRPQRGLPERAVSVLRAWLFEHFLHP 418 Query: 493 YPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKEQEQN 645 YPKDSDK MLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVK QEQN Sbjct: 419 YPKDSDKIMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKNQEQN 469 >gi|13877517|gb|AAK43836.1|AF353094_1 (AF353094) BEL1-like homeodomain 1 [Arabidopsis thaliana] Length = 680 Score = 181 bits (460), Expect = 6e-45 Identities = 94/124 (75%), Positives = 100/124 (79%), Gaps = 4/124 (3%) Frame = +1 Query: 286 SLGGGGPVDG-GKAEGGGSRLKFVDNXXXXXXXXXXXGMIQH---NAWRPQRGLPERSVS 453 SLG V G G+ EG SRLKFVD+ GMIQH NAWRPQRGLPER+VS Sbjct: 341 SLGEEDSVSGVGRFEG--SRLKFVDHHLRQQRALQQLGMIQHPSNNAWRPQRGLPERAVS 398 Query: 454 VLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKE 633 VLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMY+EE+KE Sbjct: 399 VLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKE 458 Query: 634 QEQN 645 Q +N Sbjct: 459 QAKN 462 >gi|15227535|ref|NP_181138.1| (NM_129153) BEL1-like homeobox 1 protein (BLH1); protein id: At2g35940.1, supported by cDNA: gi_13877516, supported by cDNA: gi_18176172, supported by cDNA: gi_20465476, supported by cDNA: gi_20466775 [Arabidopsis thaliana] gi|4510375|gb|AAD21463.1| (AC007017) putative homeodomain transcription factor [Arabidopsis thaliana] gi|18176173|gb|AAL59997.1| (AY072175) putative homeodomain transcription factor [Arabidopsis thaliana] gi|20465477|gb|AAM20198.1| (AY096548) putative homeodomain transcription factor [Arabidopsis thaliana] gi|20466776|gb|AAM20705.1| (AY099854) putative homeodomain transcription factor [Arabidopsis thaliana] Length = 680 Score = 181 bits (460), Expect = 6e-45 Identities = 94/124 (75%), Positives = 100/124 (79%), Gaps = 4/124 (3%) Frame = +1 Query: 286 SLGGGGPVDG-GKAEGGGSRLKFVDNXXXXXXXXXXXGMIQH---NAWRPQRGLPERSVS 453 SLG V G G+ EG SRLKFVD+ GMIQH NAWRPQRGLPER+VS Sbjct: 341 SLGEEDSVSGVGRFEG--SRLKFVDHHLRQQRALQQLGMIQHPSNNAWRPQRGLPERAVS 398 Query: 454 VLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKE 633 VLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMY+EE+KE Sbjct: 399 VLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKE 458 Query: 634 QEQN 645 Q +N Sbjct: 459 QAKN 462 >gi|132145|sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain, chloroplast precursor (RuBisCO small subunit) gi|68087|pir||RKFSS ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain precursor - common sunflower gi|18808|emb|CAA68490.1| (Y00431) ribulose bisphosphate carboxylase [Helianthus annuus] gi|755735|emb|CAA28737.1| (X05079) RuBisCO (SSU) [Helianthus annuus] Length = 178 Score = 175 bits (444), Expect = 4e-43 Identities = 81/108 (75%), Positives = 94/108 (87%) Frame = -2 Query: 324 SLPTVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK 145 S+ TV+RT QA++ APFTGLKSN AFP TKKAN DFS+LPSNGGRVQCMKVWPP+GLK Sbjct: 7 SVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLK 65 Query: 144 KYETPSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS 1 KYET SYLPPL++ L+KE+DYL+R KW+PCLEFELEHGFVYRE+ S Sbjct: 66 KYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARS 113 >gi|22652117|gb|AAN03622.1|AF406698_1 (AF406698) BEL1-related homeotic protein 11 [Solanum tuberosum] Length = 535 Score = 174 bits (440), Expect = 1e-42 Identities = 87/113 (76%), Positives = 95/113 (83%), Gaps = 2/113 (1%) Frame = +1 Query: 313 GGKAEGGGSRLKFVDNXXXXXXXXXXXGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHP 492 GGK EG S+LKFVD+ GM+Q NAW+PQRGLPER+VSVLRAWLFEHFLHP Sbjct: 210 GGKIEG--SKLKFVDHHLRQQRALQQLGMMQTNAWKPQRGLPERAVSVLRAWLFEHFLHP 267 Query: 493 YPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKE--QEQN 645 YPKDSDK +LAKQTGLTRSQVSNWFINARVRLWKPMVEEMY+EEVK+ QEQN Sbjct: 268 YPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKKNNQEQN 320 >gi|3914577|sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small chain 2, chloroplast precursor (RuBisCO small subunit 2) gi|967221|gb|AAB67846.1| (U29934) ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit protein [Flaveria pringlei] Length = 178 Score = 169 bits (428), Expect = 3e-41 Identities = 78/108 (72%), Positives = 93/108 (85%) Frame = -2 Query: 324 SLPTVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK 145 ++ TV+R QA++ APFTGLKSNVAFP TKKAN DFS+LPSNGGRVQCMKVWPP+G K Sbjct: 7 TVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKK 65 Query: 144 KYETPSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS 1 +YET SYLP L++ L+KE+DYL+RNKW+PCLEFELEHGFVYRE+ S Sbjct: 66 RYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARS 113 >gi|3914581|sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small chain 4, chloroplast precursor (RuBisCO small subunit 4) gi|967225|gb|AAB67848.1| (U29936) ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit protein [Flaveria pringlei] Length = 178 Score = 169 bits (427), Expect = 4e-41 Identities = 78/108 (72%), Positives = 92/108 (84%) Frame = -2 Query: 324 SLPTVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLK 145 ++ TV+R QA++ APFTGLKSN AFP TKKAN DFS+LPSNGGRVQCMKVWPP+G K Sbjct: 7 TVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKK 65 Query: 144 KYETPSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS 1 KYET SYLP L++ L+KE+DYL+RNKW+PCLEFELEHGFVYRE+ S Sbjct: 66 KYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARS 113 >gi|3914601|sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain, chloroplast precursor (RuBisCO small subunit) gi|7436564|pir||T09336 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain - alfalfa gi|3044116|gb|AAC13293.1| (AF056315) ribulose-1,5-bisphosphate carboxylase small subunit [Medicago sativa] Length = 180 Score = 167 bits (424), Expect = 8e-41 Identities = 75/111 (67%), Positives = 93/111 (83%) Frame = -2 Query: 333 TALSLPTVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPI 154 ++ ++ TVNR +S QA+L APFTGLKS+ FPVTKK NND +S+ SNGGRV CM+VWPP+ Sbjct: 5 SSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPV 64 Query: 153 GLKKYETPSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHS 1 G KK+ET SYLPPL++E L+KE++YLIR WIPCLEFELE GFVYRE+H S Sbjct: 65 GKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRS 115 Database: ./nr Posted date: Sep 26, 2002 10:36 AM Number of letters in database: 371,327,854 Number of sequences in database: 1,172,300 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 499,214,763 Number of Sequences: 1172300 Number of extensions: 11081991 Number of successful extensions: 43266 Number of sequences better than 1.0e-08: 377 Number of HSP's better than 0.0 without gapping: 36632 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 42132 length of database: 371,327,854 effective HSP length: 118 effective length of database: 232,996,454