• Intro

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  • Credits



  • CGPDB
    UC Davis


    Clustering analysis by Graph9 program.

    BLAST EST assembly against itself -->

    --> Generation of "Matrix" file using tcl_blast_parser.tcl program -->

    --> Clustering and bridges search by Graph9 program.


    Graph9 output with bridges info, see table lettuce_clustering at CGPDB:



    Clustering parameters were: Expect cutoff 1e-20, Identity cutoff 40% and Overlap cutoff 100 amino acids.